Creates a consensus from multiple
alignments
qualifiers for parameter: sequence
Scoring matrix
This is the scoring matrix file used when comparing
sequences. By default it is the file 'EBLOSUM62' (for proteins) or
the file 'EDNAFULL' (for nucleic sequences). These files are
found in the 'data' directory of the EMBOSS installation.
Plurality check value
Set a cut-off for the number of positive matches below
which there is no consensus. The default plurality is taken as
half the total weight of all the sequences in the alignment.
Required number of identities at a position
Provides the facility of setting the required number of
identities at a site for it to give a consensus at that position.
Therefore, if this is set to the number of sequences in the
alignment only columns of identities contribute to the consensus.
Define a threshold above which the consensus
is given in uppercase
Sets the threshold for the positive matches above which the
consensus is is upper-case and below which the consensus is in
lower-case.
Name of the consensus sequence
Name of the consensus sequence
Format of the output sequence (outseq)
Format of the output sequence (outseq)
Start the web service and receive the result. Blocks until job is finished.
Start the web service and receive a job-id. Returns immediately.
Wait until a job (by job-id) has finished. Blocks until job is finished.
Get status information about a running job. Returns immediately.
Get the results of a job (by job-id)
Start the web service and receive the result. Blocks until job is finished.
Start the web service and receive a job-id. Returns immediately.
Wait until a job (by job-id) has finished. Blocks until job is finished.
Get status information about a running job. Returns immediately.
Get the results of a job (by job-id)