HUSAR Bioinformatics Lab
Deutsches Krebsforschungszentrum Department of Molecular Biophysics
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Update of PromoterSweep pipeline (version 2)
The ClustalW package was upgraded to version 2.09
New pipeline for analysing SNPs
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HUSAR News
Date  Topic
23 Feb 2010  Update of PromoterSweep pipeline (version 2)
27 Jan 2010  The ClustalW package was upgraded to version 2.09
22 Jan 2010 New pipeline for analysing SNPs
14 Dec 2009  Move to new human reference assembly completed
05 Nov 2009  RepeatMasker version 3.2.6 installed in Husar
14 Sep 2009 Update of the Blast package
27 Jul 2009  New human assembly 37
16 Mar 2009  The Vienna RNA Package
12 Mar 2009  WolfPSort: new program for predicting protein sub-cellular localisations
12 Feb 2009  Detecting exonic splicing enhancers in human genes
18 Dec 2008 Integration of SRS into HUSAR/W2H
11 Dec 2008 Bug fix for graphical outputs in W2H
15 Oct 2008 PromoterSweep: new pipeline for analysing promoter regions
06 Oct 2008 3of5: New tool for identifying domains in sequences
25 Sep 2008  Use of fasta-files in HUSAR
21 Jul 2008  New pipeline GOPET2D
25 Jun 2008  GOPET up and running again
08 Apr 2008  Move to new HUSAR server(s)
13 Nov 2007 4 new pipelines - new release of task system
13 Nov 2007 Ensembl release 47 - new Mouse assembly
16 Jul 2007 Mouse assembly 37
22 Jun 2007 Ensembl Release 45
25 Sep 2006 miRpredict - Prediction of potential miRNAs
04 Sep 2006 Map2Genome - a tool for mapping a sequence to the genome by sequence homology
14 Aug 2006 new program TargetScan
14 Aug 2006 6 new organisms in Ensembl 40
06 Jul 2006 NEW EMBL release 87 - IMPORTANT format changes
06 Jun 2006 Overview: Genomic Databases in HUSAR
01 Jun 2006 Mouse genome available for Blat
22 Feb 2006 NCBI release 35 of mouse genome available
06 Feb 2006 pre-release 36 of human genome available
23 Dec 2005 new task: GeneConsensus
19 Dec 2005 task update: new versions of GoPet, 2DSweep, ProtSweep
12 Dec 2005 microRNA target site prediction with Miranda
24 Nov 2005 Release of the TissueDistributionDB
24 Nov 2005 TRANSFAC database available at DKFZ
24 Nov 2005 Bioccelerator reconfigured
20 Sep 2005 Irx disabled
29 Aug 2005 IPI databases
30 May 2005 Muscle: a fast and sensitive multiple alignment algorithm
17 Mar 2005 SRS upgraded from version 6 to version 7
04 Mar 2005 Gopet: a tool for annotating cDNA and protein sequences
21 Feb 2005 alternative 2d protein prediction
10 Jan 2005 new default protein database
13 Dec 2004 new release of DomainSweep
13 Dec 2004 cDNA2Genome online again
20 Jul 2004 new databases (UniRef, EMBLWGS,...)
15 Jul 2004 ScopScan: a SuperFamily search tool
07 Jul 2004 Glimmer for prokaryotic gene prediction
30 Jun 2004 BLAT and some other new applications
12 Feb 2004 RefSeq database reorganized
23 Jan 2004 new DomainSweep release
23 Jan 2004 new databases
23 Jan 2004 some new tools
24 Feb 2003 PrimerSweep: new primer analysis task
24 Feb 2003 DomainSweep/ProtSweep new release
24 Feb 2003 CDNA2Genome: new parameters and output modifications
24 Feb 2003 new databases
11 Nov 2002 new task ESTAnnotator to analyse ESTs
11 Nov 2002 new program CUSTOMMASK
11 Nov 2002 new Unigene divisions
05 Jul 2002 new task cDNA2Genome
08 May 2002 new program WEIGHBOR
08 May 2002 programs from Wise Package
08 May 2002 GENEID - gene prediction
22 Jan 2002 new program HMMGene
22 Jan 2002 new program PRRN
22 Jan 2002 new databases
18 Dec 2001 new version of SRS
12 Dec 2001 new task 2DSWEEP
09 Nov 2001 new task DOMAINSWEEP
09 Nov 2001 PROTSWEEP version 2
09 Nov 2001 4 new programs in HUSAR: PsiPred, MSFGenerator, VecMask, PsiTBlastN
09 Nov 2001 new databases: human, arabidopsis, new Unigene divisions
24 Jul 2001 new task DNASWEEP
24 Jul 2001 new HUSAR programs: Phred, Splitter & Bisulfite
24 Jul 2001 new databases: MOUSE_ENSEMBL & Xenopus laevis Unigene
03 Jul 2001 GCG version 10.2
15 May 2001 New programs from the Fasta-package
15 May 2001 New program Sim4
09 May 2001 PATH: Phylogenetic Analysis Task
09 May 2001 simple W2H-editor for text/sequence files
08 Mar 2001 new features in W2H: W2H-Loops and AliTab
06 Mar 2001 new databases: HUMAN_ASSEMBLED and MOUSE_ASSEMBLED
12 Dec 2000 new program Crib
27 Oct 2000 new database generation programs
27 Oct 2000 new databases: ENSEMBL, REFSEQ, SNPs
04 Sep 2000 New Program PSORT
04 Sep 2000 New Program PEPFIT
04 Sep 2000 New tables in FACTOR
07 Aug 2000 Bl2Seq output in W2H
28 Jul 2000 new program CloneFinder
15 Jun 2000 Analysing multiple sequences in W2H
16 May 2000 W2H: displaying database search results
25 Apr 2000 UniVec - new vector database
19 Apr 2000 ProtSweep - Protein Sequence Identification Tool
10 Apr 2000 Honest database
10 Apr 2000 Masking repeats in HUSAR
14 Mar 2000 Bioccelerator access via HUSAR
03 Dec 1999 JalView - Java Alignment Editor/Viewer
26 Nov 1999 Transmembrane Helix Prediction
12 Oct 1999 Comparing two sequences with Blast
18 Aug 1999 PROSITE profile searches with PFScan
16 Aug 1999 PSI-BLAST
23 Jul 1999 new program DBInquire
17 Jul 1999 new multiple alignment method
18 Jun 1999 NCBI's non-redundant databases
28 Apr 1999 VNC: X-Windows for PCs/Macs
21 Apr 1998 Reliable primer design with PRIDE
16 Mar 1998 DIALIGN: new alignment method
05 Feb 1998 Gene Prediction
29 Sep 1997 new program PUZZLE
01 Aug 1997 Hidden Markov Models in Sequence Analysis
16 Jan 1997 Split decomposition using SPLITS
14 Jan 1997 DSC: prot. sec. struc. prediction
12 Dec 1996 "tfindpatterns"
09 May 1994 PHYLIP