1. Manuals
2. Online Exercises
3. Online Posters
4. Lectures

Online Documentation

• UNIX - An Introduction -
  
• HUSAR - An Introduction -
  
• Staden (Rodger Staden's package) PDF version

• Slides and handouts of the advanced bioinformatics workshop (for DKFZ users), (for GENIUS users)

Printed Documentation:

    Quick guides:

• Getting started - W2H WWW Interface to HUSAR
• Introduction to the Command Line Version
• Getting started - SRS
• A quick guide to UNIX

    Manuals:

• HUSAR/GCG User's Guide
  
• OMIM manual, for the IRX version
  
• WPI/SeqLab guide (for the X-Windows interface to GCG/HUSAR)
  

• Exercises of the basic bioinformatics workshop.
• Exercises of the advanced bioinformatics workshop.

• BIRD 2007 (Bioinformatics in Research and Development, Berlin/Germany)
  MirPredict: A miRNA Prediction Tool

• NETTAB 2005 (Bologna/Italy)
  Webservice for Sequence Analysis at DKFZ

• ISMB 2004 (Glasgow/Great Britain)
  Design of Automatic Data Analysis Tools, ExpressMiner: A Tool For Mining Gene Expression Data

• NETTAB 2003 (Bologna/Italy)
  ExpressMiner: An Algorithmic Tool for Gene Expression Data

• Conference on Bioinformatics 2003 (Corunna/Spain)
  Automatic Analysis Piplelines using the W3H-Task System

• ECCB 2002 (European Conference on Computational Biology, Saarbrücken/Germany)
  Development of Annotation Tools in the W3H-Task System

• DHGP 2002 (Deutsches Humangenomprojekt, Leipzig/Germany)
  Automatic Annotation of Genomes

• GCB 2000 (German Conference on Bioinformatics, Heidelberg)
  Management and Configuration of Biocomputing Tasks using a Meta-Data Framework

• ISMB'99
  Biocomputing Resources
  
• ISMB'99
  W2H: a WWW Interface to Applications in Bioinformatics

    Information posters:

• How to BLAST a DNA sequence in 5 steps (html)
  
• A clever way to search a database: SRS (html)
  
• What is the best way to compare two sequences? (html) or (pdf)
  
• Classify your newly obtained DNA fragment by mapping it to known sequences...(html) or (pdf)
  
• W2H Simple Mode (html) or (pdf)
  
• Bioccelerator (html) or (pdf)
  
• How to detect distantly related proteins (pdf)
  
• Convenient displaying and editing of multiple alignments in W2H (pdf)
  
• Protsweep - a protein identification tool- (pdf)
  
• How to compare several sequences in one step and get an overview of your results - (printer optimized)
  
• How to analyse an eukaryotic DNA sequence in a single step (pdf)
  
• How to find functional assignments for your newly obtained protein (pdf)
  
• How to predict the secondary structure of a protein sequence (pdf)
  
• How to do phylogenetic analysis (pdf)
  
• Primer pair design with all quality controll (pdf)
  
• MiRPredict - Prediction of Potential miRNAs (pdf)
  
• PromoterSweep - Identification of Transcription Factor Binding Sites (pdf)
  

• Molecular biology Basics
  
• Biological questions
  
• Biological databases
  
• Sequence comparison in Molecular biology
  
• Database searching in Molecular biology
  
• Methods and Software for Structure Modeling
  
• Hidden Markov Models in Molecular biology